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HBASE-27225 Add BucketAllocator bucket size statistic logging #4637

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merged 4 commits into from
Jul 26, 2022

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bbeaudreault
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Example output (with log4j log formatting prefixes removed for clarity):

Bucket allocator statistics follow:
  Free bytes=5325249536; used bytes=35391673344; total bytes=40716922880; waisted bytes=355258368; completelyFreeBuckets=843
  Object size 33792; used=195000; free=114; total=195114; waisted bytes=10741760; full buckets=1048
  Object size 66560; used=275656; free=46; total=275702; waisted bytes=114128896; full buckets=2932
  Object size 99328; used=76785; free=12; total=76797; waisted bytes=46185472; full buckets=1218
  Object size 132096; used=6090; free=20; total=6110; waisted bytes=11315200; full buckets=129
  Object size 525312; used=3303; free=8; total=3311; waisted bytes=155653120; full buckets=300
  Object size 787456; used=152; free=2; total=154; waisted bytes=17233920; full buckets=21
  Object size 1573888; used=107; free=3373; total=3480; waisted bytes=0; full buckets=26

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I think this is a great idea @bbeaudreault , had a question regarding the math.

And maybe for a follow-on work, could we also publish JMX metrics for it? I guess that would make it easier for analysing which would be the ideal block size than having to go though debug logs.

// if bucket capacity is not perfectly divisible by a bucket's object size, there will
// be some left over per bucket. for some object sizes this may be large enough to be
// non-trivial and worth tuning by choosing a more divisible object size.
long waistedBytes = (bucketCapacity % bucketObjectSize) * (full + fillingBuckets);
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Mind teach me briefly on this math here? Aren't bucketCapacity and bucketObjectSize computed for each individual bucket? If so, why are we multiplying by the number of buckets that already have some data? Wouldn't this (bucketCapacity % bucketObjectSize) differ for each bucket?

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Happy to, and feel free to tell me if I'm misunderstanding here. I'm also learning the BucketCache recently.

  • bucketCapacity is calculated once for the whole cache. It's defined as 4 * largestBucketSize.
  • Then, each bucket is allocated to one of a configured number of bucket sizes
  • The configured bucket sizes may not divide into the global bucketCapacity well, leaving a remainder.
  • That size of that remainder will vary for each bucket size, and any bucket allocated to that size will have that much waisted space.
  • Typically each bucket size will have 1 freeBucket (which is probably better defined as a fillingBucket) and a number of fullBuckets. A fullBucket isn't actually full, depending on the block size it's allocated to. The remainder for the block size will be empty/unused.
  • That remainder should be the same for all buckets of a particular size, because the remainder is based on the configured bucket size.

Let's use my example snippet from above:

Bucket allocator statistics follow:
  Free bytes=5325249536; used bytes=35391673344; total bytes=40716922880; waisted bytes=355258368; completelyFreeBuckets=843
  Object size 33792; used=195000; free=114; total=195114; waisted bytes=10741760; full buckets=1048
  Object size 66560; used=275656; free=46; total=275702; waisted bytes=114128896; full buckets=2932
  Object size 99328; used=76785; free=12; total=76797; waisted bytes=46185472; full buckets=1218
  Object size 132096; used=6090; free=20; total=6110; waisted bytes=11315200; full buckets=129
  Object size 525312; used=3303; free=8; total=3311; waisted bytes=155653120; full buckets=300
  Object size 787456; used=152; free=2; total=154; waisted bytes=17233920; full buckets=21
  Object size 1573888; used=107; free=3373; total=3480; waisted bytes=0; full buckets=26
  • I've noticed across a bunch of hosts that the 525312 bucket has the most waist based on this configuration.
  • The largest bucket size is 157388, so the bucketCapacity is 6295552
  • So using 525312 as an example, it will always allocate blocks in those buckets with a size of 525312, even if the actual block size isn't exactly that amount [*].
  • 6295552 % 525312 = 517120. So given that we always allocate blocks with size 525312, we basically are missing out on ~1 block per bucket allocated for this size. There are only approx 6295552 / 525312 = 11 blocks fitting into this bucket size, so that almost 10% waist.
  • Checking 66560, which is next most waistful but has many more buckets. 6295552 % 66560 = 38912.
  • So each bucket will waist about half a block. For that block size, it can fit 94 blocks per bucket. So waisting half a block is much more efficient than above.

Buckets can be reallocated over time. Once they become a completelyFreeBucket, the next allocation that needs one, of any size, will take that bucket and reconfigure it for its purpose. At that point the amount of waist for that bucket would change based on the new block size.


[*] getting back to "even if the actual block size isn't exactly that amount". This speaks to another source of waist which is harder to calculate. So the waistBytes is actually very much an underestimation, but I'm not sure by how much. Let's say you have a block with 150k size. That doesn't fit into the 129k bucket, so it has to go into the 513k bucket. But even though the block size is 150k, we need to allocate a full 513k, leaving 363k of waisted space.

I say this is harder to calculate, but of course it'd be relatively easy. When we call roundUpToBucketSizeInfo we could just subtract the blockSize from the bucketSize, and then add that diff to a histogram. But I was just thinking this might be a very hot codepath and adding a histogram there will be a lot more expensive than what I currently have since currently the statistics are calculated totally off the hot path.

I imagine maybe the unified.encoded.blocksize could help with this problem, but also part of the reason for so much upward skew for us is because we have some users writing large rows. So may not entirely help us at least.

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So using 525312 as an example, it will always allocate blocks in those buckets with a size of 525312, even if the actual block size isn't exactly that amount [*].
6295552 % 525312 = 517120. So given that we always allocate blocks with size 525312, we basically are missing out on ~1 block per bucket allocated for this size. There are only approx 6295552 / 525312 = 11 blocks fitting into this bucket size, so that almost 10% waist.

Ok, so this waste here is a best case scenario, not taking into account the real size of allocated blocks on each bucket? Considering that real world cases may not have perfectly sized 512KB blocks, fragmentation would be even higher?

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yea, correct. fragmentation could make this worse, and its harder to cheaply calculate

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if you have ideas, i'd be happy to try adding that. One thought I had was to add a LongAdder to each BucketSizeInfo, and increment it in allocateBlock(int blockSize). But really we should also be decrementing somewhere. Possibly in freeBlock, but we'd need to add the blockSize as an argument there. And there's a question of the impact on performance (probably small/worth it?)

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I just implemented the above in my latest patch. I'm thinking a LongAdder increment/decrement is probably not going to make a noticeable difference next to everything else.

Here's an example output from the test, unfortunately I don't have a real-world example:

Free bytes=20314112; used bytes=10435584; total bytes=30749696; wasted bytes=70656; fragmentation bytes=728064; completelyFreeBuckets=10
  Object size 5120; used=410; free=0; total=410; wasted bytes=2048; fragmentation bytes=419840, full buckets=1
  Object size 9216; used=228; free=0; total=228; wasted bytes=0; fragmentation bytes=233472, full buckets=1
  Object size 17408; used=0; free=120; total=120; wasted bytes=0; fragmentation bytes=0, full buckets=0
  Object size 33792; used=0; free=62; total=62; wasted bytes=0; fragmentation bytes=0, full buckets=0
  Object size 41984; used=0; free=50; total=50; wasted bytes=0; fragmentation bytes=0, full buckets=0
  Object size 50176; used=0; free=41; total=41; wasted bytes=0; fragmentation bytes=0, full buckets=0
  Object size 58368; used=0; free=36; total=36; wasted bytes=0; fragmentation bytes=0, full buckets=0
  Object size 66560; used=31; free=0; total=31; wasted bytes=37888; fragmentation bytes=31744, full buckets=1
  Object size 99328; used=42; free=0; total=42; wasted bytes=30720; fragmentation bytes=43008, full buckets=2
  Object size 132096; used=0; free=15; total=15; wasted bytes=0; fragmentation bytes=0, full buckets=0
  Object size 197632; used=0; free=10; total=10; wasted bytes=0; fragmentation bytes=0, full buckets=0
  Object size 263168; used=0; free=7; total=7; wasted bytes=0; fragmentation bytes=0, full buckets=0
  Object size 394240; used=0; free=5; total=5; wasted bytes=0; fragmentation bytes=0, full buckets=0
  Object size 525312; used=0; free=4; total=4; wasted bytes=0; fragmentation bytes=0, full buckets=0

We could combine wasted + fragmented. Probably confusing to have both, but also useful once you understand the difference (which we can document)

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Thanks for the explanation and for the addition of the fragmentation measure.

LGTM, +1!

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+1 💚 dupname 0m 0s No case conflicting files found.
+1 💚 hbaseanti 0m 0s Patch does not have any anti-patterns.
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_ Other Tests _
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31m 45s
Subsystem Report/Notes
Docker ClientAPI=1.41 ServerAPI=1.41 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-4637/4/artifact/yetus-general-check/output/Dockerfile
GITHUB PR #4637
Optional Tests dupname asflicense javac spotbugs hadoopcheck hbaseanti spotless checkstyle compile
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Max. process+thread count 60 (vs. ulimit of 30000)
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versions git=2.17.1 maven=3.6.3 spotbugs=4.2.2
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@bbeaudreault
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Thanks @wchevreuil, can you give it one more look?

I realized LongAdder is not necessary because both increment/decrement are behind synchronization. Changed it to a normal long.

I also added a bunch of javadoc to help people understand what they're looking at.

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🎊 +1 overall

Vote Subsystem Runtime Comment
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_ Prechecks _
_ master Compile Tests _
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_ Patch Compile Tests _
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Subsystem Report/Notes
Docker ClientAPI=1.41 ServerAPI=1.41 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-4637/4/artifact/yetus-jdk8-hadoop3-check/output/Dockerfile
GITHUB PR #4637
Optional Tests javac javadoc unit shadedjars compile
uname Linux 9eb98e8a17fa 5.4.0-96-generic #109-Ubuntu SMP Wed Jan 12 16:49:16 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux
Build tool maven
Personality dev-support/hbase-personality.sh
git revision master / 31fc97e
Default Java AdoptOpenJDK-1.8.0_282-b08
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Max. process+thread count 2494 (vs. ulimit of 30000)
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Console output https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-4637/4/console
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🎊 +1 overall

Vote Subsystem Runtime Comment
+0 🆗 reexec 1m 4s Docker mode activated.
_ Prechecks _
+1 💚 dupname 0m 0s No case conflicting files found.
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_ master Compile Tests _
+1 💚 mvninstall 2m 17s master passed
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_ Patch Compile Tests _
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+1 💚 spotbugs 1m 23s the patch passed
_ Other Tests _
+1 💚 asflicense 0m 10s The patch does not generate ASF License warnings.
31m 34s
Subsystem Report/Notes
Docker ClientAPI=1.41 ServerAPI=1.41 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-4637/5/artifact/yetus-general-check/output/Dockerfile
GITHUB PR #4637
Optional Tests dupname asflicense javac spotbugs hadoopcheck hbaseanti spotless checkstyle compile
uname Linux b42939226ffb 5.4.0-90-generic #101-Ubuntu SMP Fri Oct 15 20:00:55 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux
Build tool maven
Personality dev-support/hbase-personality.sh
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Default Java AdoptOpenJDK-1.8.0_282-b08
Max. process+thread count 64 (vs. ulimit of 30000)
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Console output https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-4637/5/console
versions git=2.17.1 maven=3.6.3 spotbugs=4.2.2
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💔 -1 overall

Vote Subsystem Runtime Comment
+0 🆗 reexec 0m 44s Docker mode activated.
-0 ⚠️ yetus 0m 3s Unprocessed flag(s): --brief-report-file --spotbugs-strict-precheck --whitespace-eol-ignore-list --whitespace-tabs-ignore-list --quick-hadoopcheck
_ Prechecks _
_ master Compile Tests _
+1 💚 mvninstall 2m 28s master passed
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+1 💚 javadoc 0m 23s master passed
_ Patch Compile Tests _
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_ Other Tests _
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208m 50s
Subsystem Report/Notes
Docker ClientAPI=1.41 ServerAPI=1.41 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-4637/5/artifact/yetus-jdk11-hadoop3-check/output/Dockerfile
GITHUB PR #4637
Optional Tests javac javadoc unit shadedjars compile
uname Linux 48b4e5b62f53 5.4.0-1025-aws #25~18.04.1-Ubuntu SMP Fri Sep 11 12:03:04 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux
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Personality dev-support/hbase-personality.sh
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Default Java AdoptOpenJDK-11.0.10+9
unit https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-4637/5/artifact/yetus-jdk11-hadoop3-check/output/patch-unit-hbase-server.txt
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versions git=2.17.1 maven=3.6.3
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🎊 +1 overall

Vote Subsystem Runtime Comment
+0 🆗 reexec 1m 44s Docker mode activated.
-0 ⚠️ yetus 0m 4s Unprocessed flag(s): --brief-report-file --spotbugs-strict-precheck --whitespace-eol-ignore-list --whitespace-tabs-ignore-list --quick-hadoopcheck
_ Prechecks _
_ master Compile Tests _
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_ Patch Compile Tests _
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_ Other Tests _
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226m 26s
Subsystem Report/Notes
Docker ClientAPI=1.41 ServerAPI=1.41 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-4637/5/artifact/yetus-jdk8-hadoop3-check/output/Dockerfile
GITHUB PR #4637
Optional Tests javac javadoc unit shadedjars compile
uname Linux a0dd5881bbf7 5.4.0-1043-aws #45~18.04.1-Ubuntu SMP Fri Apr 9 23:32:25 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux
Build tool maven
Personality dev-support/hbase-personality.sh
git revision master / 31fc97e
Default Java AdoptOpenJDK-1.8.0_282-b08
Test Results https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-4637/5/testReport/
Max. process+thread count 2771 (vs. ulimit of 30000)
modules C: hbase-server U: hbase-server
Console output https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-4637/5/console
versions git=2.17.1 maven=3.6.3
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🎊 +1 overall

Vote Subsystem Runtime Comment
+0 🆗 reexec 0m 41s Docker mode activated.
_ Prechecks _
+1 💚 dupname 0m 0s No case conflicting files found.
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_ master Compile Tests _
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_ Other Tests _
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31m 58s
Subsystem Report/Notes
Docker ClientAPI=1.41 ServerAPI=1.41 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-4637/6/artifact/yetus-general-check/output/Dockerfile
GITHUB PR #4637
Optional Tests dupname asflicense javac spotbugs hadoopcheck hbaseanti spotless checkstyle compile
uname Linux 16ed0b5e010c 5.4.0-1025-aws #25~18.04.1-Ubuntu SMP Fri Sep 11 12:03:04 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux
Build tool maven
Personality dev-support/hbase-personality.sh
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Default Java AdoptOpenJDK-1.8.0_282-b08
Max. process+thread count 60 (vs. ulimit of 30000)
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Console output https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-4637/6/console
versions git=2.17.1 maven=3.6.3 spotbugs=4.2.2
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🎊 +1 overall

Vote Subsystem Runtime Comment
+0 🆗 reexec 0m 39s Docker mode activated.
-0 ⚠️ yetus 0m 2s Unprocessed flag(s): --brief-report-file --spotbugs-strict-precheck --whitespace-eol-ignore-list --whitespace-tabs-ignore-list --quick-hadoopcheck
_ Prechecks _
_ master Compile Tests _
+1 💚 mvninstall 2m 12s master passed
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_ Patch Compile Tests _
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_ Other Tests _
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222m 32s
Subsystem Report/Notes
Docker ClientAPI=1.41 ServerAPI=1.41 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-4637/6/artifact/yetus-jdk8-hadoop3-check/output/Dockerfile
GITHUB PR #4637
Optional Tests javac javadoc unit shadedjars compile
uname Linux faed9f8c8b0c 5.4.0-1043-aws #45~18.04.1-Ubuntu SMP Fri Apr 9 23:32:25 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux
Build tool maven
Personality dev-support/hbase-personality.sh
git revision master / 0ae42dd
Default Java AdoptOpenJDK-1.8.0_282-b08
Test Results https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-4637/6/testReport/
Max. process+thread count 2624 (vs. ulimit of 30000)
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Console output https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-4637/6/console
versions git=2.17.1 maven=3.6.3
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💔 -1 overall

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+0 🆗 reexec 1m 59s Docker mode activated.
-0 ⚠️ yetus 0m 2s Unprocessed flag(s): --brief-report-file --spotbugs-strict-precheck --whitespace-eol-ignore-list --whitespace-tabs-ignore-list --quick-hadoopcheck
_ Prechecks _
_ master Compile Tests _
+1 💚 mvninstall 3m 53s master passed
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_ Patch Compile Tests _
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_ Other Tests _
-1 ❌ unit 307m 27s hbase-server in the patch failed.
332m 22s
Subsystem Report/Notes
Docker ClientAPI=1.41 ServerAPI=1.41 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-4637/6/artifact/yetus-jdk11-hadoop3-check/output/Dockerfile
GITHUB PR #4637
Optional Tests javac javadoc unit shadedjars compile
uname Linux 64db868ad1a6 5.4.0-1025-aws #25~18.04.1-Ubuntu SMP Fri Sep 11 12:03:04 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux
Build tool maven
Personality dev-support/hbase-personality.sh
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Default Java AdoptOpenJDK-11.0.10+9
unit https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-4637/6/artifact/yetus-jdk11-hadoop3-check/output/patch-unit-hbase-server.txt
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Max. process+thread count 2573 (vs. ulimit of 30000)
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Console output https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-4637/6/console
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@bbeaudreault bbeaudreault merged commit ebd1891 into apache:master Jul 26, 2022
@bbeaudreault bbeaudreault deleted the HBASE-27225 branch July 26, 2022 00:54
bbeaudreault added a commit that referenced this pull request Jul 26, 2022
Signed-off-by: Wellington Chevreuil <wchevreuil@apache.org>
bbeaudreault added a commit that referenced this pull request Jul 26, 2022
Signed-off-by: Wellington Chevreuil <wchevreuil@apache.org>
bbeaudreault added a commit that referenced this pull request Jul 26, 2022
Signed-off-by: Wellington Chevreuil <wchevreuil@apache.org>
bbeaudreault added a commit to HubSpot/hbase that referenced this pull request Jul 26, 2022
…ic logging (apache#4637) (addendum)

Signed-off-by: Wellington Chevreuil <wchevreuil@apache.org>
vinayakphegde pushed a commit to vinayakphegde/hbase that referenced this pull request Apr 4, 2024
…#4637)

Signed-off-by: Wellington Chevreuil <wchevreuil@apache.org>
(cherry picked from commit 1dfbd6c)
Change-Id: Ie649842c2ac2bb675f94e2d500a9a13684dc2808
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